IL_7XNY_286

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CCCCGC*GCGGAGCG

Length

14 nucleotides

Bulged bases

7XNY|1|S2|C|1783

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7XNY|1|S2|C|1750
7XNY|1|S2|C|1751
7XNY|1|S2|C|1752
7XNY|1|S2|C|1753
7XNY|1|S2|G|1754
7XNY|1|S2|C|1755
*
7XNY|1|S2|G|1777
7XNY|1|S2|C|1778
7XNY|1|S2|G|1779
7XNY|1|S2|G|1780
7XNY|1|S2|A|1781
7XNY|1|S2|G|1782
7XNY|1|S2|C|1783
7XNY|1|S2|G|1784

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LW

60S ribosomal protein L24

Chain SG

40S ribosomal protein S6