IL_7XNY_301

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

AGACAUGAGAG*CUCUGAUCGUUU

Length

23 nucleotides

Bulged bases

7XNY|1|L1|A|3947, 7XNY|1|L1|C|3948, 7XNY|1|L1|U|4058, 7XNY|1|L1|C|4059

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7XNY|1|L1|A|3945
7XNY|1|L1|G|3946
7XNY|1|L1|A|3947
7XNY|1|L1|C|3948
7XNY|1|L1|A|3949
7XNY|1|L1|U|3950
7XNY|1|L1|G|3951
7XNY|1|L1|A|3952
7XNY|1|L1|G|3953
7XNY|1|L1|A|3954
7XNY|1|L1|G|3955
*
7XNY|1|L1|C|4057
7XNY|1|L1|U|4058
7XNY|1|L1|C|4059
7XNY|1|L1|U|4060
7XNY|1|L1|G|4061
7XNY|1|L1|A|4062
7XNY|1|L1|U|4063
7XNY|1|L1|C|4064
7XNY|1|L1|G|4065
7XNY|1|L1|U|4066
7XNY|1|L1|U|4067
7XNY|1|L1|U|4068

Current chains

Chain L1

28S rRNA

Nearby chains

Chain Li

60S ribosomal protein L36

Chain SB

40S ribosomal protein S3a