IL_7XNY_310
3D structure
- PDB id
- 7XNY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- (OMU)CC(PSU)U(OMU)*AUUCG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7XNY_310 not in the Motif Atlas
- Homologous match to IL_8P9A_382
- Geometric discrepancy: 0.2152
- The information below is about IL_8P9A_382
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31545.1
- Basepair signature
- cWW-L-R-L-cWW-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
7XNY|1|S2|OMU|116
7XNY|1|S2|C|117
7XNY|1|S2|C|118
7XNY|1|S2|PSU|119
7XNY|1|S2|U|120
7XNY|1|S2|OMU|121
*
7XNY|1|S2|A|343
7XNY|1|S2|U|344
7XNY|1|S2|U|345
7XNY|1|S2|C|346
7XNY|1|S2|G|347
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SE
- 40S ribosomal protein S4, X isoform
- Chain SI
- 40S ribosomal protein S8
Coloring options: