IL_7Y41_014

3D structure

PDB id

7Y41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GUAC*GAGUGAAAGAGUAC

Length

18 nucleotides

Bulged bases

7Y41|1|A|G|591, 7Y41|1|A|A|595

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Y41_014 not in the Motif Atlas

Homologous match to IL_4WF9_015

Geometric discrepancy: 0.181

The information below is about IL_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44923.1

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

9

Unit IDs

7Y41|1|A|G|569
7Y41|1|A|U|570
7Y41|1|A|A|571
7Y41|1|A|C|572
*
7Y41|1|A|G|583
7Y41|1|A|A|584
7Y41|1|A|G|585
7Y41|1|A|U|586
7Y41|1|A|G|587
7Y41|1|A|A|588
7Y41|1|A|A|589
7Y41|1|A|A|590
7Y41|1|A|G|591
7Y41|1|A|A|592
7Y41|1|A|G|593
7Y41|1|A|U|594
7Y41|1|A|A|595
7Y41|1|A|C|596

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L22

Chain V

50S ribosomal protein L24