IL_7Y41_021

3D structure

PDB id

7Y41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GAAGC*GUGAUAGC

Length

13 nucleotides

Bulged bases

7Y41|1|A|G|916, 7Y41|1|A|G|920

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Y41_021 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.1309

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7Y41|1|A|G|789
7Y41|1|A|A|790
7Y41|1|A|A|791
7Y41|1|A|G|792
7Y41|1|A|C|793
*
7Y41|1|A|G|914
7Y41|1|A|U|915
7Y41|1|A|G|916
7Y41|1|A|A|917
7Y41|1|A|U|918
7Y41|1|A|A|919
7Y41|1|A|G|920
7Y41|1|A|C|921

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain M

50S ribosomal protein L15