IL_7Y41_024

3D structure

PDB id

7Y41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Y41_024 not in the Motif Atlas

Homologous match to IL_7RQB_021

Geometric discrepancy: 0.1098

The information below is about IL_7RQB_021

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

7Y41|1|A|U|818
7Y41|1|A|G|819
7Y41|1|A|A|820
7Y41|1|A|A|821
7Y41|1|A|G|822
*
7Y41|1|A|U|839
7Y41|1|A|G|840
7Y41|1|A|G|841
7Y41|1|A|A|842
7Y41|1|A|G|843

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2