IL_7Y41_046

3D structure

PDB id

7Y41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GUUG*CACC

Length

8 nucleotides

Bulged bases

7Y41|1|A|U|1179

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Y41_046 not in the Motif Atlas

Homologous match to IL_5J7L_285

Geometric discrepancy: 0.2826

The information below is about IL_5J7L_285

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92446.2

Basepair signature

cWW-cWW-R-L-L

Number of instances in this motif group

5

Unit IDs

7Y41|1|A|G|1177
7Y41|1|A|U|1178
7Y41|1|A|U|1179
7Y41|1|A|G|1180
*
7Y41|1|A|C|1194
7Y41|1|A|A|1195
7Y41|1|A|C|1196
7Y41|1|A|C|1197

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L11

Chain N

50S ribosomal protein L16

Chain W

50S ribosomal protein L25