IL_7Y41_069

3D structure

PDB id

7Y41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CGAUG*CUAG

Length

9 nucleotides

Bulged bases

7Y41|1|A|U|1641

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Y41_069 not in the Motif Atlas

Homologous match to IL_4WF9_054

Geometric discrepancy: 0.2769

The information below is about IL_4WF9_054

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

7Y41|1|A|C|1638
7Y41|1|A|G|1639
7Y41|1|A|A|1640
7Y41|1|A|U|1641
7Y41|1|A|G|1642
*
7Y41|1|A|C|1797
7Y41|1|A|U|1798
7Y41|1|A|A|1799
7Y41|1|A|G|1800

Current chains

Chain A

23S ribosomal RNA

Nearby chains