IL_7Y41_070

3D structure

PDB id

7Y41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GGAA*UAUGC

Length

9 nucleotides

Bulged bases

7Y41|1|A|U|1779

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Y41_070 not in the Motif Atlas

Homologous match to IL_5J7L_296

Geometric discrepancy: 0.2135

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

7Y41|1|A|G|1653
7Y41|1|A|G|1654
7Y41|1|A|A|1655
7Y41|1|A|A|1656
*
7Y41|1|A|U|1777
7Y41|1|A|A|1778
7Y41|1|A|U|1779
7Y41|1|A|G|1780
7Y41|1|A|C|1781

Current chains

Chain A

23S ribosomal RNA

Nearby chains