IL_7Y41_081

3D structure

PDB id

7Y41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CAUGG*UGAG

Length

9 nucleotides

Bulged bases

7Y41|1|A|U|1932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Y41_081 not in the Motif Atlas

Geometric match to IL_4PMI_008

Geometric discrepancy: 0.2757

The information below is about IL_4PMI_008

Detailed Annotation

tWW and non-canonical cWW

Broad Annotation

tWW and non-canonical cWW

Motif group

IL_28284.1

Basepair signature

cWW-cWW-tWW-cWW

Number of instances in this motif group

3

Unit IDs

7Y41|1|A|C|1930
7Y41|1|A|A|1931
7Y41|1|A|U|1932
7Y41|1|A|G|1933
7Y41|1|A|G|1934
*
7Y41|1|A|U|1960
7Y41|1|A|G|1961
7Y41|1|A|A|1962
7Y41|1|A|G|1963

Current chains

Chain A

23S ribosomal RNA

Nearby chains