IL_7Y41_118

3D structure

PDB id

7Y41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CG*UGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Y41_118 not in the Motif Atlas

Homologous match to IL_7RQB_096

Geometric discrepancy: 0.1093

The information below is about IL_7RQB_096

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_76223.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

10

Unit IDs

7Y41|1|A|C|2731
7Y41|1|A|G|2732
*
7Y41|1|A|U|2804
7Y41|1|A|G|2805
7Y41|1|A|G|2806

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3