IL_7Y41_124

3D structure

PDB id

7Y41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Y41_124 not in the Motif Atlas

Geometric match to IL_5J7L_346

Geometric discrepancy: 0.1202

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7Y41|1|A|C|2876
7Y41|1|A|U|2877
7Y41|1|A|A|2878
7Y41|1|A|G|2879
7Y41|1|A|U|2880
7Y41|1|A|A|2881
7Y41|1|A|C|2882
*
7Y41|1|A|G|2887
7Y41|1|A|G|2888
7Y41|1|A|A|2889
7Y41|1|A|C|2890
7Y41|1|A|C|2891
7Y41|1|A|G|2892

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6