IL_7Y41_128

3D structure

PDB id

7Y41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GAUAAC*GGAAAC

Length

12 nucleotides

Bulged bases

7Y41|1|A|A|2989

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Y41_128 not in the Motif Atlas

Homologous match to IL_5J7L_350

Geometric discrepancy: 0.0934

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

7Y41|1|A|G|2961
7Y41|1|A|A|2962
7Y41|1|A|U|2963
7Y41|1|A|A|2964
7Y41|1|A|A|2965
7Y41|1|A|C|2966
*
7Y41|1|A|G|2986
7Y41|1|A|G|2987
7Y41|1|A|A|2988
7Y41|1|A|A|2989
7Y41|1|A|A|2990
7Y41|1|A|C|2991

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain K

50S ribosomal protein L13

Chain f

50S ribosomal protein L36