IL_7Y7D_013

3D structure

PDB id

7Y7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

7Y7D|1|A|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Y7D_013 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1171

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

7Y7D|1|A|G|147
7Y7D|1|A|G|148
7Y7D|1|A|A|149
7Y7D|1|A|U|150
7Y7D|1|A|A|151
7Y7D|1|A|A|152
7Y7D|1|A|C|153
*
7Y7D|1|A|G|168
7Y7D|1|A|C|169
7Y7D|1|A|U|170
7Y7D|1|A|A|171
7Y7D|1|A|A|172
7Y7D|1|A|U|173
7Y7D|1|A|A|174
7Y7D|1|A|C|175

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20