IL_7Y7D_025
3D structure
- PDB id
- 7Y7D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacterial Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.58 Å
Loop
- Sequence
- G(PSU)GCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 7Y7D|1|A|A|532, 7Y7D|1|A|U|534, 7Y7D|1|A|A|535
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7Y7D_025 not in the Motif Atlas
- Homologous match to IL_4LFB_021
- Geometric discrepancy: 0.1157
- The information below is about IL_4LFB_021
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.4
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
7Y7D|1|A|G|515
7Y7D|1|A|PSU|516
7Y7D|1|A|G|517
7Y7D|1|A|C|518
7Y7D|1|A|C|519
7Y7D|1|A|A|520
7Y7D|1|A|G|521
*
7Y7D|1|A|C|528
7Y7D|1|A|G|529
7Y7D|1|A|G|530
7Y7D|1|A|U|531
7Y7D|1|A|A|532
7Y7D|1|A|A|533
7Y7D|1|A|U|534
7Y7D|1|A|A|535
7Y7D|1|A|C|536
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain C
- 30S ribosomal protein S3
- Chain D
- 30S ribosomal protein S4
- Chain L
- 30S ribosomal protein S12
- Chain V
- Transfer RNA; tRNA
- Chain X
- mRNA
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