3D structure

PDB id
7Y7E (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.41 Å

Loop

Sequence
GAAAC*GAGAUAGC
Length
13 nucleotides
Bulged bases
7Y7E|1|a|G|801, 7Y7E|1|a|G|805
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7Y7E_082 not in the Motif Atlas
Homologous match to IL_5J7L_260
Geometric discrepancy: 0.0731
The information below is about IL_5J7L_260
Detailed Annotation
tHW-tHW cross-strand stack
Broad Annotation
No text annotation
Motif group
IL_54041.2
Basepair signature
cWW-L-R-L-R-tWH-L-cWW
Number of instances in this motif group
7

Unit IDs

7Y7E|1|a|G|674
7Y7E|1|a|A|675
7Y7E|1|a|A|676
7Y7E|1|a|A|677
7Y7E|1|a|C|678
*
7Y7E|1|a|G|799
7Y7E|1|a|A|800
7Y7E|1|a|G|801
7Y7E|1|a|A|802
7Y7E|1|a|U|803
7Y7E|1|a|A|804
7Y7E|1|a|G|805
7Y7E|1|a|C|806

Current chains

Chain a
23S rRNA

Nearby chains

Chain e
50S ribosomal protein L4
Chain k
50S ribosomal protein L15

Coloring options:


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