IL_7Y7E_183

3D structure

PDB id

7Y7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Y7E_183 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.0409

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

7Y7E|1|a|G|1666
7Y7E|1|a|G|1667
7Y7E|1|a|A|1668
7Y7E|1|a|A|1669
7Y7E|1|a|C|1670
7Y7E|1|a|U|1671
7Y7E|1|a|A|1672
7Y7E|1|a|G|1673
7Y7E|1|a|G|1674
*
7Y7E|1|a|C|1990
7Y7E|1|a|U|1991
7Y7E|1|a|G|1992
7Y7E|1|a|U|1993
7Y7E|1|a|C|1994

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain j

50S ribosomal protein L14