IL_7Y7F_086

3D structure

PDB id

7Y7F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAC)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

7Y7F|1|a|G|776, 7Y7F|1|a|A|788, 7Y7F|1|a|A|789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Y7F_086 not in the Motif Atlas

Homologous match to IL_5J7L_265

Geometric discrepancy: 0.0805

The information below is about IL_5J7L_265

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

7Y7F|1|a|G|775
7Y7F|1|a|G|776
7Y7F|1|a|G|777
*
7Y7F|1|a|C|787
7Y7F|1|a|A|788
7Y7F|1|a|A|789
7Y7F|1|a|U|790
7Y7F|1|a|C|791

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain c

50S ribosomal protein L2

Chain r

50S ribosomal protein L22