IL_7Y7F_106

3D structure

PDB id

7Y7F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAC)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

7Y7F|1|a|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Y7F_106 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.0619

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

7Y7F|1|a|C|1208
7Y7F|1|a|U|1209
7Y7F|1|a|G|1210
7Y7F|1|a|C|1211
7Y7F|1|a|G|1212
7Y7F|1|a|A|1213
7Y7F|1|a|A|1214
7Y7F|1|a|G|1215
*
7Y7F|1|a|U|1234
7Y7F|1|a|G|1235
7Y7F|1|a|G|1236
7Y7F|1|a|A|1237
7Y7F|1|a|G|1238

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

50S ribosomal protein L20