IL_7YLA_007

3D structure

PDB id

7YLA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-HflX complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7YLA_007 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.063

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7YLA|1|I|C|239
7YLA|1|I|C|240
7YLA|1|I|A|241
7YLA|1|I|G|242
7YLA|1|I|U|243
7YLA|1|I|A|244
7YLA|1|I|G|245
*
7YLA|1|I|C|253
7YLA|1|I|G|254
7YLA|1|I|A|255
7YLA|1|I|A|256
7YLA|1|I|C|257
7YLA|1|I|G|258

Current chains

Chain I

Escherichia coli strain K-12 substr. MG1655_TMP32XR1 chromosome, complete genome

Nearby chains

Chain T

50S ribosomal protein L15

Chain l

50S ribosomal protein L35