IL_7YLA_016

3D structure

PDB id

7YLA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-HflX complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

7YLA|1|I|G|801, 7YLA|1|I|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7YLA_016 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.0686

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7YLA|1|I|G|674
7YLA|1|I|A|675
7YLA|1|I|A|676
7YLA|1|I|A|677
7YLA|1|I|C|678
*
7YLA|1|I|G|799
7YLA|1|I|A|800
7YLA|1|I|G|801
7YLA|1|I|A|802
7YLA|1|I|U|803
7YLA|1|I|A|804
7YLA|1|I|G|805
7YLA|1|I|C|806

Current chains

Chain I

Escherichia coli strain K-12 substr. MG1655_TMP32XR1 chromosome, complete genome

Nearby chains

Chain M

50S ribosomal protein L4

Chain T

50S ribosomal protein L15