IL_7YLA_032

3D structure

PDB id

7YLA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-HflX complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7YLA_032 not in the Motif Atlas

Geometric match to IL_5J7L_278

Geometric discrepancy: 0.0788

The information below is about IL_5J7L_278

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

7YLA|1|I|U|1004
7YLA|1|I|C|1005
7YLA|1|I|C|1006
7YLA|1|I|C|1007
7YLA|1|I|A|1008
7YLA|1|I|A|1009
7YLA|1|I|A|1010
7YLA|1|I|G|1011
*
7YLA|1|I|C|1150
7YLA|1|I|A|1151

Current chains

Chain I

Escherichia coli strain K-12 substr. MG1655_TMP32XR1 chromosome, complete genome

Nearby chains

Chain R

50S ribosomal protein L13

Chain Y

50S ribosomal protein L20