IL_7YLA_042

3D structure

PDB id

7YLA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-HflX complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

7YLA|1|I|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7YLA_042 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.0887

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

7YLA|1|I|C|1208
7YLA|1|I|U|1209
7YLA|1|I|G|1210
7YLA|1|I|C|1211
7YLA|1|I|G|1212
7YLA|1|I|A|1213
7YLA|1|I|A|1214
7YLA|1|I|G|1215
*
7YLA|1|I|U|1234
7YLA|1|I|G|1235
7YLA|1|I|G|1236
7YLA|1|I|A|1237
7YLA|1|I|G|1238

Current chains

Chain I

Escherichia coli strain K-12 substr. MG1655_TMP32XR1 chromosome, complete genome

Nearby chains

Chain Y

50S ribosomal protein L20