IL_7YLA_050

3D structure

PDB id

7YLA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-HflX complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

GAAG*CCUGC

Length

9 nucleotides

Bulged bases

7YLA|1|I|U|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7YLA_050 not in the Motif Atlas

Homologous match to IL_5J7L_296

Geometric discrepancy: 0.1134

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

7YLA|1|I|G|1432
7YLA|1|I|A|1433
7YLA|1|I|A|1434
7YLA|1|I|G|1435
*
7YLA|1|I|C|1557
7YLA|1|I|C|1558
7YLA|1|I|U|1559
7YLA|1|I|G|1560
7YLA|1|I|C|1561

Current chains

Chain I

Escherichia coli strain K-12 substr. MG1655_TMP32XR1 chromosome, complete genome

Nearby chains

Chain K

50S ribosomal protein L2