IL_7YLA_098

3D structure

PDB id

7YLA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-HflX complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7YLA_098 not in the Motif Atlas

Geometric match to IL_5J7L_346

Geometric discrepancy: 0.0806

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7YLA|1|I|C|2652
7YLA|1|I|U|2653
7YLA|1|I|A|2654
7YLA|1|I|G|2655
7YLA|1|I|U|2656
7YLA|1|I|A|2657
7YLA|1|I|C|2658
*
7YLA|1|I|G|2663
7YLA|1|I|G|2664
7YLA|1|I|A|2665
7YLA|1|I|C|2666
7YLA|1|I|C|2667
7YLA|1|I|G|2668

Current chains

Chain I

Escherichia coli strain K-12 substr. MG1655_TMP32XR1 chromosome, complete genome

Nearby chains

Chain 6

GTPase HflX

Chain O

50S ribosomal protein L6