IL_7YLA_114

3D structure

PDB id

7YLA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-HflX complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7YLA_114 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.0546

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

7YLA|1|I|G|1666
7YLA|1|I|G|1667
7YLA|1|I|A|1668
7YLA|1|I|A|1669
7YLA|1|I|C|1670
7YLA|1|I|U|1671
7YLA|1|I|A|1672
7YLA|1|I|G|1673
7YLA|1|I|G|1674
*
7YLA|1|I|C|1990
7YLA|1|I|U|1991
7YLA|1|I|G|1992
7YLA|1|I|U|1993
7YLA|1|I|C|1994

Current chains

Chain I

Escherichia coli strain K-12 substr. MG1655_TMP32XR1 chromosome, complete genome

Nearby chains

Chain L

50S ribosomal protein L3

Chain S

50S ribosomal protein L14