3D structure

PDB id
7YLA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of 50S-HflX complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.52 Å

Loop

Sequence
GGAACUAGG*CUGUC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7YLA_114 not in the Motif Atlas
Homologous match to IL_5J7L_386
Geometric discrepancy: 0.0546
The information below is about IL_5J7L_386
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_22854.4
Basepair signature
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
Number of instances in this motif group
7

Unit IDs

7YLA|1|I|G|1666
7YLA|1|I|G|1667
7YLA|1|I|A|1668
7YLA|1|I|A|1669
7YLA|1|I|C|1670
7YLA|1|I|U|1671
7YLA|1|I|A|1672
7YLA|1|I|G|1673
7YLA|1|I|G|1674
*
7YLA|1|I|C|1990
7YLA|1|I|U|1991
7YLA|1|I|G|1992
7YLA|1|I|U|1993
7YLA|1|I|C|1994

Current chains

Chain I
Escherichia coli strain K-12 substr. MG1655_TMP32XR1 chromosome, complete genome

Nearby chains

Chain L
50S ribosomal protein L3
Chain S
50S ribosomal protein L14

Coloring options:


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