IL_7YLA_120

3D structure

PDB id

7YLA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-HflX complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

GUGUAGGAUAGGU*ACCC

Length

17 nucleotides

Bulged bases

7YLA|1|I|U|2111, 7YLA|1|I|A|2114, 7YLA|1|I|G|2116, 7YLA|1|I|U|2118, 7YLA|1|I|A|2119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7YLA_120 not in the Motif Atlas

Geometric match to IL_7LYF_005

Geometric discrepancy: 0.3591

The information below is about IL_7LYF_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25872.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

7

Unit IDs

7YLA|1|I|G|2110
7YLA|1|I|U|2111
7YLA|1|I|G|2112
7YLA|1|I|U|2113
7YLA|1|I|A|2114
7YLA|1|I|G|2115
7YLA|1|I|G|2116
7YLA|1|I|A|2117
7YLA|1|I|U|2118
7YLA|1|I|A|2119
7YLA|1|I|G|2120
7YLA|1|I|G|2121
7YLA|1|I|U|2122
*
7YLA|1|I|A|2176
7YLA|1|I|C|2177
7YLA|1|I|C|2178
7YLA|1|I|C|2179

Current chains

Chain I

Escherichia coli strain K-12 substr. MG1655_TMP32XR1 chromosome, complete genome

Nearby chains