IL_7Z20_039

3D structure

PDB id

7Z20 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

7Z20|1|b|A|1142

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Z20_039 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.0942

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

7Z20|1|b|U|1017
7Z20|1|b|U|1018
7Z20|1|b|A|1019
7Z20|1|b|A|1020
7Z20|1|b|G|1021
7Z20|1|b|U|1022
7Z20|1|b|G|1023
*
7Z20|1|b|C|1139
7Z20|1|b|U|1140
7Z20|1|b|A|1141
7Z20|1|b|A|1142
7Z20|1|b|A|1143

Current chains

Chain b

23S rRNA

Nearby chains

Chain 8

50S ribosomal protein L36

Chain j

50S ribosomal protein L13