IL_7Z20_040
3D structure
- PDB id
- 7Z20 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.29 Å
Loop
- Sequence
- GGGAAAC*GGAAGAUGUAACGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 7Z20|1|b|A|1126, 7Z20|1|b|U|1129
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7Z20_040 not in the Motif Atlas
- Geometric match to IL_5J7L_281
- Geometric discrepancy: 0.054
- The information below is about IL_5J7L_281
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.3
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
7Z20|1|b|G|1023
7Z20|1|b|G|1024
7Z20|1|b|G|1025
7Z20|1|b|A|1026
7Z20|1|b|A|1027
7Z20|1|b|A|1028
7Z20|1|b|C|1029
*
7Z20|1|b|G|1123
7Z20|1|b|G|1124
7Z20|1|b|A|1125
7Z20|1|b|A|1126
7Z20|1|b|G|1127
7Z20|1|b|A|1128
7Z20|1|b|U|1129
7Z20|1|b|G|1130
7Z20|1|b|U|1131
7Z20|1|b|A|1132
7Z20|1|b|A|1133
7Z20|1|b|C|1134
7Z20|1|b|G|1135
7Z20|1|b|G|1136
7Z20|1|b|G|1137
7Z20|1|b|G|1138
7Z20|1|b|C|1139
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 8
- 50S ribosomal protein L36
- Chain a
- 5S ribosomal RNA; 5S rRNA
- Chain d
- 50S ribosomal protein L3
- Chain j
- 50S ribosomal protein L13
- Chain m
- 50S ribosomal protein L16
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