IL_7Z20_048
3D structure
- PDB id
- 7Z20 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.29 Å
Loop
- Sequence
- AUAAGUAA*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7Z20_048 not in the Motif Atlas
- Geometric match to IL_5J7L_289
- Geometric discrepancy: 0.047
- The information below is about IL_5J7L_289
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
7Z20|1|b|A|1261
7Z20|1|b|U|1262
7Z20|1|b|A|1263
7Z20|1|b|A|1264
7Z20|1|b|G|1265
7Z20|1|b|U|1266
7Z20|1|b|A|1267
7Z20|1|b|A|1268
*
7Z20|1|b|U|2010
7Z20|1|b|G|2011
7Z20|1|b|A|2012
7Z20|1|b|A|2013
7Z20|1|b|A|2014
7Z20|1|b|U|2015
7Z20|1|b|U|2016
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 3
- 50S ribosomal protein L32
- Chain e
- 50S ribosomal protein L4
- Chain s
- 50S ribosomal protein L22
- Chain z
- Gelation factor
Coloring options: