IL_7Z20_067

3D structure

PDB id

7Z20 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

7Z20|1|b|G|1698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Z20_067 not in the Motif Atlas

Geometric match to IL_5J7L_308

Geometric discrepancy: 0.0682

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7Z20|1|b|C|1685
7Z20|1|b|G|1686
7Z20|1|b|U|1687
7Z20|1|b|A|1688
7Z20|1|b|A|1689
7Z20|1|b|C|1690
*
7Z20|1|b|G|1695
7Z20|1|b|G|1696
7Z20|1|b|A|1697
7Z20|1|b|G|1698
7Z20|1|b|A|1699
7Z20|1|b|A|1700
7Z20|1|b|G|1701

Current chains

Chain b

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2