IL_7Z20_068

3D structure

PDB id

7Z20 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

7Z20|1|b|U|1713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Z20_068 not in the Motif Atlas

Geometric match to IL_5J7L_309

Geometric discrepancy: 0.0845

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7Z20|1|b|U|1711
7Z20|1|b|A|1712
7Z20|1|b|U|1713
7Z20|1|b|G|1714
7Z20|1|b|U|1715
7Z20|1|b|A|1716
7Z20|1|b|G|1717
*
7Z20|1|b|U|1741
7Z20|1|b|G|1742
7Z20|1|b|A|1743
7Z20|1|b|A|1744
7Z20|1|b|A|1745

Current chains

Chain b

23S rRNA

Nearby chains