IL_7Z20_084

3D structure

PDB id

7Z20 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

7Z20|1|b|G|2237

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Z20_084 not in the Motif Atlas

Geometric match to IL_5J7L_325

Geometric discrepancy: 0.0777

The information below is about IL_5J7L_325

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7Z20|1|b|U|2080
7Z20|1|b|A|2081
7Z20|1|b|G|2082
*
7Z20|1|b|U|2235
7Z20|1|b|G|2236
7Z20|1|b|G|2237
7Z20|1|b|G|2238

Current chains

Chain b

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L28

Chain c

50S ribosomal protein L2