IL_7Z20_110

3D structure

PDB id

7Z20 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Z20_110 not in the Motif Atlas

Geometric match to IL_5J7L_354

Geometric discrepancy: 0.1361

The information below is about IL_5J7L_354

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_70411.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

7Z20|1|b|U|2846
7Z20|1|b|G|2847
7Z20|1|b|U|2848
7Z20|1|b|A|2849
7Z20|1|b|A|2850
7Z20|1|b|G|2851
*
7Z20|1|b|U|2864
7Z20|1|b|U|2865
7Z20|1|b|G|2866
7Z20|1|b|A|2867
7Z20|1|b|G|2868

Current chains

Chain b

23S rRNA

Nearby chains

Chain n

50S ribosomal protein L17

Chain p

50S ribosomal protein L19