IL_7Z34_025

3D structure

PDB id

7Z34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-60S particle bound to DRG1(AFG2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Z34_025 not in the Motif Atlas

Geometric match to IL_5TBW_026

Geometric discrepancy: 0.2388

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7Z34|1|1|C|758
7Z34|1|1|U|759
7Z34|1|1|G|760
7Z34|1|1|A|761
7Z34|1|1|U|762
7Z34|1|1|G|763
*
7Z34|1|1|C|768
7Z34|1|1|G|769
7Z34|1|1|G|770
7Z34|1|1|A|771
7Z34|1|1|U|772
7Z34|1|1|G|773

Current chains

Chain 1

35S pre-ribosomal RNA

Nearby chains

Chain K

60S ribosomal protein L28

Chain L

60S ribosomal protein L13-A

Chain q

60S ribosomal protein L42-A