IL_7Z34_029

3D structure

PDB id

7Z34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-60S particle bound to DRG1(AFG2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGUU*AUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Z34_029 not in the Motif Atlas

Homologous match to IL_8C3A_034

Geometric discrepancy: 0.1909

The information below is about IL_8C3A_034

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

7Z34|1|1|G|869
7Z34|1|1|G|870
7Z34|1|1|U|871
7Z34|1|1|U|872
*
7Z34|1|1|A|888
7Z34|1|1|U|889
7Z34|1|1|C|890

Current chains

Chain 1

35S pre-ribosomal RNA

Nearby chains

Chain j

60S ribosomal protein L37-A