IL_7Z34_046

3D structure

PDB id

7Z34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-60S particle bound to DRG1(AFG2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

7Z34|1|1|A|1263

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Z34_046 not in the Motif Atlas

Homologous match to IL_8C3A_059

Geometric discrepancy: 0.2831

The information below is about IL_8C3A_059

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

7Z34|1|1|G|1262
7Z34|1|1|A|1263
7Z34|1|1|G|1264
7Z34|1|1|U|1265
7Z34|1|1|G|1266
*
7Z34|1|1|C|1275
7Z34|1|1|U|1276
7Z34|1|1|C|1277

Current chains

Chain 1

35S pre-ribosomal RNA

Nearby chains

Chain W

Ribosome assembly factor MRT4

Chain a

60S ribosomal protein L12-A

Chain r

Ribosome biogenesis protein NSA2