IL_7Z34_077

3D structure

PDB id

7Z34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-60S particle bound to DRG1(AFG2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

7Z34|1|1|U|2205

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Z34_077 not in the Motif Atlas

Geometric match to IL_6MWN_006

Geometric discrepancy: 0.3516

The information below is about IL_6MWN_006

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

7Z34|1|1|C|2204
7Z34|1|1|U|2205
7Z34|1|1|G|2206
*
7Z34|1|1|C|2237
7Z34|1|1|G|2238

Current chains

Chain 1

35S pre-ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L2-A

Chain v

60S ribosomal export protein NMD3