IL_7Z34_084

3D structure

PDB id

7Z34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-60S particle bound to DRG1(AFG2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

7Z34|1|1|A|2808

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Z34_084 not in the Motif Atlas

Homologous match to IL_8C3A_099

Geometric discrepancy: 0.2173

The information below is about IL_8C3A_099

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

7Z34|1|1|G|2412
7Z34|1|1|A|2413
*
7Z34|1|1|U|2807
7Z34|1|1|A|2808
7Z34|1|1|C|2809
7Z34|1|1|C|2810

Current chains

Chain 1

35S pre-ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L2-A

Chain N

60S ribosomal protein L15-A

Chain b

Nucleolar GTP-binding protein 1