IL_7Z34_133

3D structure

PDB id

7Z34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-60S particle bound to DRG1(AFG2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUAC*GAA

Length

7 nucleotides

Bulged bases

7Z34|1|1|A|1075

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Z34_133 not in the Motif Atlas

Geometric match to IL_7LYF_004

Geometric discrepancy: 0.347

The information below is about IL_7LYF_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

7Z34|1|1|U|1073
7Z34|1|1|U|1074
7Z34|1|1|A|1075
7Z34|1|1|C|1076
*
7Z34|1|1|G|1083
7Z34|1|1|A|1084
7Z34|1|1|A|1085

Current chains

Chain 1

35S pre-ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L5

Chain T

60S ribosomal protein L21-A

Chain o

60S ribosomal protein L29