IL_7Z3O_097

3D structure

PDB id

7Z3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-associated RAC complex on the 80S ribosome - RAC-2 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

7Z3O|1|1|A|2360, 7Z3O|1|1|C|2942

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Z3O_097 not in the Motif Atlas

Homologous match to IL_5TBW_092

Geometric discrepancy: 0.128

The information below is about IL_5TBW_092

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7Z3O|1|1|G|2359
7Z3O|1|1|A|2360
7Z3O|1|1|A|2361
*
7Z3O|1|1|U|2940
7Z3O|1|1|A|2941
7Z3O|1|1|C|2942
7Z3O|1|1|C|2943

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3-like protein

Chain LP

60S ribosomal protein l17-like protein