IL_7ZAG_030

3D structure

PDB id

7ZAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Pyrococcus abyssi 30S bound to Met-initiator tRNA,mRNA, aIF1A and the C-terminal domain of aIF5B.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

CGAAAUC*GGCUCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZAG|1|2|C|571
7ZAG|1|2|G|572
7ZAG|1|2|A|573
7ZAG|1|2|A|574
7ZAG|1|2|A|575
7ZAG|1|2|U|576
7ZAG|1|2|C|577
*
7ZAG|1|2|G|595
7ZAG|1|2|G|596
7ZAG|1|2|C|597
7ZAG|1|2|U|598
7ZAG|1|2|C|599
7ZAG|1|2|G|600

Current chains

Chain 2

rRNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain E

30S ribosomal protein S4e

Chain I

30S ribosomal protein S8

Chain R

30S ribosomal protein S17