IL_7ZAG_065

3D structure

PDB id

7ZAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Pyrococcus abyssi 30S bound to Met-initiator tRNA,mRNA, aIF1A and the C-terminal domain of aIF5B.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

GACAAUG*CCUAAAC

Length

14 nucleotides

Bulged bases

7ZAG|1|2|U|1260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZAG|1|2|G|1221
7ZAG|1|2|A|1222
7ZAG|1|2|C|1223
7ZAG|1|2|A|1224
7ZAG|1|2|A|1225
7ZAG|1|2|U|1226
7ZAG|1|2|G|1227
*
7ZAG|1|2|C|1258
7ZAG|1|2|C|1259
7ZAG|1|2|U|1260
7ZAG|1|2|A|1261
7ZAG|1|2|A|1262
7ZAG|1|2|A|1263
7ZAG|1|2|C|1264

Current chains

Chain 2

rRNA

Nearby chains

Chain H

30S ribosomal protein S7

Chain K

30S ribosomal protein S9

Chain L

30S ribosomal protein S10

Chain P

30S ribosomal protein S14 type Z

Chain U

30S ribosomal protein S19e