IL_7ZFW_009

3D structure

PDB id

7ZFW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 80S ribosome obtained from ssDNA coated grid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

7ZFW|1|L5|U|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZFW_009 not in the Motif Atlas

Homologous match to IL_8C3A_013

Geometric discrepancy: 0.2301

The information below is about IL_8C3A_013

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7ZFW|1|L5|G|199
7ZFW|1|L5|U|200
7ZFW|1|L5|C|201
*
7ZFW|1|L5|G|214
7ZFW|1|L5|C|215

Current chains

Chain L5

RNA (615-MER)

Nearby chains