IL_7ZFW_010

3D structure

PDB id

7ZFW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 80S ribosome obtained from ssDNA coated grid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAC*GAGUUCAAGAGGGC

Length

18 nucleotides

Bulged bases

7ZFW|1|L5|G|409, 7ZFW|1|L5|G|413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZFW_010 not in the Motif Atlas

Homologous match to IL_5TBW_014

Geometric discrepancy: 0.1492

The information below is about IL_5TBW_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.7

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

7ZFW|1|L5|G|387
7ZFW|1|L5|A|388
7ZFW|1|L5|A|389
7ZFW|1|L5|C|390
*
7ZFW|1|L5|G|401
7ZFW|1|L5|A|402
7ZFW|1|L5|G|403
7ZFW|1|L5|U|404
7ZFW|1|L5|U|405
7ZFW|1|L5|C|406
7ZFW|1|L5|A|407
7ZFW|1|L5|A|408
7ZFW|1|L5|G|409
7ZFW|1|L5|A|410
7ZFW|1|L5|G|411
7ZFW|1|L5|G|412
7ZFW|1|L5|G|413
7ZFW|1|L5|C|414

Current chains

Chain L5

RNA (615-MER)

Nearby chains