IL_7ZFW_014

3D structure

PDB id

7ZFW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 80S ribosome obtained from ssDNA coated grid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGUCCG*CGGC

Length

10 nucleotides

Bulged bases

7ZFW|1|L5|G|483

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZFW_014 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.2081

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

7ZFW|1|L5|G|482
7ZFW|1|L5|G|483
7ZFW|1|L5|U|484
7ZFW|1|L5|C|485
7ZFW|1|L5|C|486
7ZFW|1|L5|G|487
*
7ZFW|1|L5|C|669
7ZFW|1|L5|G|670
7ZFW|1|L5|G|671
7ZFW|1|L5|C|672

Current chains

Chain L5

RNA (615-MER)

Nearby chains