IL_7ZFW_017

3D structure

PDB id

7ZFW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 80S ribosome obtained from ssDNA coated grid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAUC*GAC

Length

7 nucleotides

Bulged bases

7ZFW|1|L5|A|509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZFW_017 not in the Motif Atlas

Geometric match to IL_5TBW_008

Geometric discrepancy: 0.2499

The information below is about IL_5TBW_008

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7ZFW|1|L5|G|508
7ZFW|1|L5|A|509
7ZFW|1|L5|U|510
7ZFW|1|L5|C|511
*
7ZFW|1|L5|G|648
7ZFW|1|L5|A|649
7ZFW|1|L5|C|650

Current chains

Chain L5

RNA (615-MER)

Nearby chains