IL_7ZJW_013

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AU*AAAUGU

Length

8 nucleotides

Bulged bases

7ZJW|1|L5|U|150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_013 not in the Motif Atlas

Homologous match to IL_8C3A_007

Geometric discrepancy: 0.192

The information below is about IL_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_19724.3

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

7ZJW|1|L5|A|121
7ZJW|1|L5|U|122
*
7ZJW|1|L5|A|147
7ZJW|1|L5|A|148
7ZJW|1|L5|A|149
7ZJW|1|L5|U|150
7ZJW|1|L5|G|151
7ZJW|1|L5|U|152

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LJ

60S ribosomal protein eL8

Chain LQ

60S ribosomal protein L15