IL_7ZJW_027

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

7ZJW|1|L5|C|690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_027 not in the Motif Atlas

Geometric match to IL_4WF9_035

Geometric discrepancy: 0.3944

The information below is about IL_4WF9_035

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

7ZJW|1|L5|C|459
7ZJW|1|L5|C|460
*
7ZJW|1|L5|G|689
7ZJW|1|L5|C|690
7ZJW|1|L5|G|691

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

60S ribosomal protein L6

Chain Ls

60S ribosomal protein eL28