IL_7ZJW_036

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAU*AC

Length

5 nucleotides

Bulged bases

7ZJW|1|L5|A|511

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_036 not in the Motif Atlas

Geometric match to IL_6WPI_001

Geometric discrepancy: 0.2324

The information below is about IL_6WPI_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

7ZJW|1|L5|G|510
7ZJW|1|L5|A|511
7ZJW|1|L5|U|512
*
7ZJW|1|L5|A|643
7ZJW|1|L5|C|644

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LO

60S ribosomal protein eL13

Chain Ld

60S ribosomal protein L27a